Genome-wide analysis of alternative splicing events in Hordeum vulgare: highlighting retention of intron-based splicing and its possible function through network analysis

In this study, using homology mapping of assembled expressed sequence tags against the genomic data, we identified alternative splicing events in barley. Results demonstrated that intron retention is frequently associated with specific abiotic stresses. Network analysis resulted in discovery of some specific sub-networks between miRNAs and transcription factors in genes with high number of alternative splicing, such as cross talk between SPL2, SPL10 and SPL11 regulated by miR156 and miR157 families. To confirm the alternative splicing events, elongation factor protein (MLOC_3412) was selected followed by experimental verification of the predicted splice variants by Semi quantitative Reverse Transcription PCR (qRT-PCR). Our novel integrative approach opens a new avenue for functional annotation of alternative splicing through regulatory-based network discovery.Bahman Panahi, Seyed Abolghasem Mohammadi, Reyhaneh Ebrahimi Khaksefidi, Jalil Fallah Mehrabadi, Esmaeil Ebrahimi

A Pilot Study on the Association of Lead, 8-Hydroxyguanine, and Malondialdehyde Levels in Opium Addicts’ Blood Serum with Illicit Drug Use and Non-Addict Persons

While a large body of literature has shown the health problems of illicit drug use, research is needed on how substance abuse impacts DNA damage and contaminants in blood, especially given Pb-contaminated opium. This pilot study aimed to evaluate the levels of lead (Pb), 8-hydroxy di-guanine (8-oxo-Gua), and malondialdehyde (MDA) in the blood serum of opium addicts and non-addict people. The current study is a case–control study with a cross-sectional design. A sample of 50 opium-addicted and non-addict adults were chosen for this study using convenience and random sampling methods. Participants were divided into two groups: addicts and non-addicts. The atomic absorption spectroscopy method was used to measure the quantity of Pb, and the Enzyme-Linked Immunosorbent Assay (ELISA) method was used to measure the amount of 8-oxo-Gua and MDA. The data were analyzed using an independent t-test. The results show that the amount of Pb in the blood serum of addicted women and men was higher than levels in non-addict men and women, for the study participants (p-value = 0.001). Blood levels were not significantly different between addicts and non-addicts for men or women for 8-oxo-Gua (p-value = 0.647 for women and p-value = 0.785 for men) and MDA (p-value = 0.867 for women and p-value = 0.995 for men). In general, addicts’ blood Pb levels were found to be substantially higher than those of normal non-addict persons in this pilot study. As a result, testing for blood Pb levels in addicts may be informative in instances when symptoms are inconclusive.</jats:p

Regulation of High-Temperature Stress Response by Small RNAs

Temperature extremes constitute one of the most common environmental stresses that adversely affect the growth and development of plants. Transcriptional regulation of temperature stress responses, particularly involving protein-coding gene networks, has been intensively studied in recent years. High-throughput sequencing technologies enabled the detection of a great number of small RNAs that have been found to change during and following temperature stress. The precise molecular action of some of these has been elucidated in detail. In the present chapter, we summarize the current understanding of small RNA-mediated modulation of high- temperature stress-regulatory pathways including basal stress responses, acclimation, and thermo-memory. We gather evidence that suggests that small RNA network changes, involving multiple upregulated and downregulated small RNAs, balance the trade-off between growth/development and stress responses, in order to ensure successful adaptation. We highlight specific characteristics of small RNA-based tem- perature stress regulation in crop plants. Finally, we explore the perspectives of the use of small RNAs in breeding to improve stress tolerance, which may be relevant for agriculture in the near future

The Evaluation of Removal Efficiency of Phenol from Aqueous Solutions using Moringa Peregrina Tree Shell Ash

Background and purpose: Phenol is one of prevalent contaminants found in many industrial wastewaters. The combination with special features, such as high toxicity, carcinogenic properties, vitality gathering ability, low biodegradation potentiality and others, based on the U.S Environmental Protection Agency, classified as a priority pollutant. The purpose of this study was to determine the efficiency of Moringa Peregrina tree shell ash for the removal of phenol from aqueous solutions. Materials and Methods: This study is experimental and pilot scale. To determine the efficiency of Moringa Peregrina tree shell ash for the removal of phenol from aqueous solutions the examination was carried out in a batch system. To achieve the aim of this study, the effect of each of the parameters affecting the adsorption process, such as initial pH of solution, contact time, adsorbent dose and initial concentration of phenol in solution were studied. Results: The results showed that the highest percentage of phenol removal by the ash occurred at pH 6, initial concentration100 mg.L-1and adsorbent dose 0.4 g/l in which the 79.96% phenol was removed. For the analysis of the absorption constant, the Freundlich and Langmuir isotherm were used. The results showed that the experimental data fit the Langmuir (R2=0.9833) much better than the Freundlich model (R2=0.9373). Conclusion: According to the results of this study, it was found that the Moringa Peregrina tree shell ash is not only a low-cost adsorbent but also has a high performance in the removal of phenol from aqueous solutions

Degradation of furfural in aqueous solution using activated persulfate and peroxymonosulfate by ultrasound irradiation

Furfural is a toxic compound that can cause many problems for human health and the environment. In this study, we addressed the degradation of furfural in aqueous solution using the activated persulfate (SPS) and peroxymonosulfate (PMS) through the ultrasonic (US) wave. Besides, the effect of various parameters (pH, oxidizing dose, initial furfural concentration, US frequency, Inorganic anions concentration, and scavenger) on SPS + US (SPS/US) and PMS + US (PMS/US) processes were examined. The results showed, in order to furfural removal, the US had excellent efficiency in activating SPS and PMS, as in SPS/US and PMS/US processes, 95.3 and 58.4 of furfural (at 25 mg/L concentration) was decomposed in 90 min, respectively. The furfural degradation rate increased with increasing oxidizing dose and US frequency in both SPS/US and PMS/US processes. Considering the synergistic effect, the best removal rate has occurred in the SPS/US process. In the SPS/US and PMS/US processes, furfural removal increased at natural pH (pH 7), and the presence of inorganic anions such as NO3 � and Cl� had negative effects on furfural removal efficiency. Also CO3 2� and HCO3 � acted as a radical scavenger in the SPS/US process but these anions in the PMS/US process produced more SO4 �° radicals, and subsequently, they increased the furfural degradation rate. The results also showed that the predominant radical in the oxidation reactions is the sulfate radical. This study showed that the SPS/US and PMS/US processes are promising methods for degrading organic pollutants in the environment. © 2020 Elsevier Lt

Investigating the Role of Environmental Factors on the Survival, Stability, and Transmission of SARS-CoV-2, and Their Contribution to COVID-19 Outbreak: A Review

Studies conducted in the last four years show conflicting findings on the role of the environment in the survival, stability, and transmission of SARS-CoV-2. Based on the current evidence, the factors that affect the severity of COVID-19 include host interaction, environmental stability, virus volume, stability, transmission, social interactions, and restriction measures. Moreover, the persistence of the virus depends on different environmental conditions, videlicet temperature, humidity, pH, salinity, and solar radiation. The outbreak of respiratory viruses is related mainly to temperature and humidity, and geographical locations (latitude). In SARS-CoV-2, mainly temperature and humidity seem to play a fundamental role. Moreover, studies have indicated that social health factors such as equitable health systems, hygiene, and underlying diseases have played a pivotal role in the incidence and outbreak of COVID-19. Therefore, addressing health issues associated with reducing SARS-CoV-2 outbreaks plays an essential role in global health. In contrast, the environmental stimuli of the COVID-19 outbreak are mainly unknown. Given the ongoing threat of the COVID-19 pandemic, it is important to understand the stimuli to respond quickly to emerging SARS-CoV-2 variants while implementing long-term and sustainable control strategies. This review discusses the role of environmental factors and health conditions in the outbreak of SARS-CoV-2